Publications
Precision symptom phenotyping identifies early clinical and proteomic predictors of distinct COVID-19 sequelae
2024
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Epsi NJ, Chenoweth JG, Blair PW, Lindholm DA, Ganesan A, Lalani T, Smith A, Mody RM, Jones MU, Colombo RE, Colombo CJ, Schofield C, Ewers EC, Larson DT, Berjohn CM, Maves RC, Fries AC, Chang D, Wyatt A, Scher AI, Byrne C, Rusiecki J, Saunders DL, Livezey J, Malloy A, Bazan S, Maldonado C, Edwards MS, Mende K, Simons MP, O'Connell RJ, Tribble DR, Agan BK, Burgess TH, Pollett SD, Richard SA
Evidence of Orientia spp. Endemicity among Severe Infectious Disease Cohorts, Uganda
2024
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Blair PW, Kobba K, Okello S, Alharthi S, Naluyima P, Clemens E, Kibuuka H, Clark DV, Kakooza F, Lamorde M, Manabe YC, Dumler JS, Illness AF; Sepsis in Uganda study teams
Sudan Virus Disease among Health Care Workers, Uganda, 2022
2024
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Wailagala A, Blair PW, Kobba K, Mubaraka K, Aanyu-Tumukahebwa H, Kiiza D, Sekikongo MT, Klena JD, Waitt P, Bahatungire RR, Kyobe HS, Atwine D, Adaku A, Bongomin B, Kirenga B, Boore A, Clark DV, Kaggwa D, Gregory M, Kabweru W, Kayondo W, Mbabazi SK, Kibuuka H, Kimuli I, Mulei S, Mutegeki M, Emmanuel B, Mwebesa H, Naluyima P, Okello S, Tumusiime A, Montgomery J, Vasireddy V, Olaro C, Wayengera M, Lamorde M
Phylogenetic and phenotypic characterization of Burkholderia pseudomallei isolates from Ghana reveals a novel sequence type and common phenotypes.
2024
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Kevin L Schully, Logan J Voegtly, Gregory K Rice, Hannah Drumm, Maren C Fitzpatrick, Francisco Malagon, April Shea, Ming Dong, George Oduro, F J Lourens Robberts, Paul K A Dartey, Alex Owusu-Ofori, Danielle V Clark, Regina Z Cer, Kimberly A Bishop-Lilly
Sepsis endotypes identified by host gene expression across global cohorts
2024
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Josh G. Chenoweth, Joost Brandsma, Deborah A. Striegel, Pavol Genzor, Elizabeth Chiyka, Paul W. Blair, Subramaniam Krishnan, Elliot Dogbe, Isaac Boakye, Gary B. Fogel, Ephraim L. Tsalik, Christopher W. Woods, Alex Owusu-Ofori, Chris Oppong, George Oduro, Te Vantha, Andrew G. Letizia, Charmagne G. Beckett, Kevin L. Schully & Danielle V. Clark
Gene expression signatures in blood from a West African sepsis cohort define host response phenotypes
2024
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Josh G. Chenoweth, Carlo Colantuoni, Deborah A. Striegel, Pavol Genzor, Joost Brandsma, Paul W. Blair, Subramaniam Krishnan, Elizabeth Chiyka, Mehran Fazli, Rittal Mehta, Michael Considine, Leslie Cope, Audrey C. Knight, Anissa Elayadi, Anne Fox, Ronna Hertzano, Andrew G. Letizia, Alex Owusu-Ofori, Isaac Boakye, Albert A. Aduboffour, Daniel Ansong, Eno Biney, George Oduro, Kevin L. Schully & Danielle V. Clark
Electrochemical Immunoassay for Capturing Capsular Polysaccharide of Burkholderia pseudomallei: Early Onsite Detection of Melioidosis
2024
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Madhurantakam S, Karnam JB, Dhamu VN, Seetaraman S, Gates-Hollingsworth MA, AuCoin DP, Clark DV, Schully KL, Muthukumar S, Prasad S
A proof of concept for a targeted enrichment approach to the simultaneous detection and characterization of rickettsial pathogens from clinical specimens
2024
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Adrian C. Paskey, Kevin L. Schully, Logan J. Voegtly, Catherine Arnold, Regina Cer,
Kenneth G. Frey, Paul W. Blair, Danielle V. Clark, Hong Ge, Allen L. Richards, Christina
M. Farris, Kimberly Bishop-Lilly
Point-of-care biomarker assay for rapid multiplexed detection of CRP and IP-10
2023
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Wilson CS, Vashi B, Genzor P, Gregory MK, Yau J, Wolfe L, Lochhead MJ, Papst P, Pettrone K, Blair PW, Krishnan S, Chenoweth JG, Clark DV
Screening tools for predicting mortality of adults with suspected sepsis: an international sepsis cohort validation study
2023
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Blair PW, Mehta R, Oppong CK, Tin S, Ko E, Tsalik EL, Chenoweth J, Rozo M, Adams N, Beckett C, Woods CW, Striegel DA, Salvador MG, Brandsma J, McKean L, Mahle RE, Hulsey WR, Krishnan S, Prouty M, Letizia A, Fox A, Faix D, Lawler JV, Duplessis C, Gregory MG, Vantha T, Owusu-Ofori AK, Ansong D, Oduro G, Schully KL, Clark DV
A machine learning approach identifies distinct early-symptom cluster phenotypes which correlate with hospitalization, failure to return to activities, and prolonged COVID-19 symptoms
2023
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Epsi NJ, Powers JH, Lindholm DA, Mende K, Malloy A, Ganesan A, Huprikar N, Lalani T, Smith A, Mody RM, Jones MU, Bazan SE, Colombo RE, Colombo CJ, Ewers EC, Larson DT, Berjohn CM, Maldonado CJ, Blair PW, Chenoweth J, Saunders DL, Livezey J, Maves RC, Sanchez Edwards M, Rozman JS, Simons MP, Tribble DR, Agan BK, Burgess TH, Pollett SD
Distinct blood inflammatory biomarker clusters stratify host phenotypes during the middle phase of COVID-19
2022
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Blair PW, Brandsma J, Chenoweth J, Richard SA, Epsi NJ, Mehta R, Striegel D, Clemens EG, Alharthi S, Lindholm DA, Maves RC, Larson DT, Mende K, Colombo RE, Ganesan A, Lalani T, Colombo CJ, Malloy AA, Snow AL, Schully KL, Lanteri C, Simons MP, Dumler JS, Tribble D, Burgess T, Pollett S, Agan BK, Clark DV
Do worsening lung ultrasound scans identify severe COVID-19 trajectories?
2022
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Blair PW, Hwang J, Pearce J, Fong TC, Cui E, Herrera P, Liu G, Crainiceanu C, Siddharthan T, Clark DV
Rapid, Low-Complexity, Simultaneous Bacterial Group Identification and Antimicrobial Susceptibility Testing Performed Directly on Positive Blood Culture Bottles Using Chromogenic Agar
2022
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Robberts FJL, Owusu-Ofori A, Oduro G, Gyampomah TK, Marles N, Fox AT, Chenoweth JG, Schully KL, Clark DV
Point-of-Care Lung Ultrasound Predicts Severe Disease and Death Due to COVID-19: A Prospective Cohort Study
2022
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Blair PW, Siddharthan T, Liu G, Bai J, Cui E, East J, Herrera P, Anova L, Mahadevan V, Hwang J, Hossen S, Seo S, Sonuga O, Lawrence J, Peters J, Cox AL, Manabe YC, Fenstermacher K, Shea S, Rothman RE, Hansoti B, Sauer L, Crainiceanu C, Clark DV
Genomic and virologic characterization of samples from a shipboard outbreak of COVID-19 reveals distinct variants within limited temporospatial parameters
2022
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Cer RZ, Voegtly LJ, Adhikari BN, Pike BL, Lueder MR, Glang LA, Malagon F, Ana ES, Regeimbal JM, Potts-Szoke MF, Schully KL, Smith DR, Bishop-Lilly KA
Assessing the use of a micro-sampling device for measuring blood protein levels in healthy subjects and COVID-19 patients
2022
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Cer RZ, Voegtly LJ, Adhikari BN, Pike BL, Lueder MR, Glang LA, Malagon F, Ana ES, Regeimbal JM, Potts-Szoke MF, Schully KL, Smith DR, Bishop-Lilly KA
On the Environmental Presence of Burkholderia pseudomallei in South-Central Ghana
2022
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Tanak AS, Sardesai AU, Muthukumar S, Krishnan S, Striegel DA, Schully KL, Clark DV and Prasad S
Multiplexed host immune response biosensor for rapid sepsis stratification and endotyping at point-of-care
2022
Authors →
Tanak AS, Sardesai AU, Muthukumar S, Krishnan S, Striegel DA, Schully KL, Clark DV and Prasad S
Durability of SARS-CoV-2–Specific T-Cell Responses at 12 Months Postinfection
2021
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Lu Z, Laing ED, Pena DaMata J, Pohida K, Tso MS, Samuels EC, Epsi NJ, Dorjbal B, Lake C, Richard SA, Maves RC, Lindholm DA, Rozman JS, English C, Huprikar N, Mende K, Colombo RE, Colombo CJ, Broder CC, Ganesan A, Lanteri CA, Agan BK, Tribble D, Simons MP, Dalgard CL, Blair PW, Chenoweth JG, Pollett SD, Snow AL, Burgess TH, Malloy AMW
COVID-19 Outcomes Among US Military Health System Beneficiaries Include Complications Across Multiple Organ Systems and Substantial Functional Impairment
2021
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Richard SA, Pollett SD, Lanteri CA, Millar EV, Fries AC, Maves RC, Utz GC, Lalani T, Smith A, Mody RM, Ganesan A, Colombo RE, Colombo CJ, Lindholm DA, Madar C, Chi S, Huprikar N, Larson DT, Bazan SE, English C, Parmelee E, Mende K, Laing ED, Broder CC, Blair PW, Chenoweth JG, Simons MP, Tribble DR, Agan BK, Burgess TH
An approach to rapidly assess sepsis through multi-biomarker host response using machine learning algorithm
2021
Authors →
Sardesai AU, Tanak AS, Krishnan S, Striegel DA, Schully KL, Clark DV, Muthukumar S and Prasad S
An Observational Study of Sepsis in Takeo Province Cambodia: An in-depth examination of pathogens causing severe infections
2020
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Rozo M, Schully KL, Philipson C, Fitkariwala A, Nhim D, Som T, Sieng D, Huot B, Dul S, Gregory MJ, Heang V, Vaughn A, Vantha T, Prouty AM, Chao CC, Zhang Z, Belinskaya T, Voegtly LJ, Cer RZ, Bishop-Lilly KA, Duplessis C, Lawler JV and Clark DV
Pre-positioned Outbreak Research: The Joint Medical Emerging Diseases Intervention Clinical Capability Experience in Uganda
2020
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Martins KA, Ayebare RR, Bhadelia N, Kiweewa F, Waitt P, Mimbe D, Okello S, Naluyima P, Brett-Major DM, Lawler JV, Millard M, Walwema R, Cardile AP, Ritchie C, Kwiecien A, Badu H, Espinosa BJ, Beckett C, Bavari S, Zaman S, Christopher G, Clark DV, Lamorde M, Kibuuka H
Direct-from-blood RNA sequencing identifies the cause of post-bronchoscopy fever
2019
Authors →
Ko ER, Philipson CW, Burke TW, Cer RZ, Bishop-Lilly KA, Voegtly LJ, Tsalik EL, Woods CW, Clark DV and Schully KL
Next-generation Diagnostics for Melioidosis: Evaluation of a Prototype i-STAT Cartridge to Detect Burkholderia pseudomallei Biomarkers
2019
Authors →
Schully KL, Young CC, Mayo M, Connolly A, Rigas V, Spall A, Chan AA, Salvador MG, Lawler JV, Opdyke JA, Clark DV and Currie BJ
Evaluating the discriminating capacity of cell death (apoptotic) biomarkers in sepsis
2018
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Duplessis C, Gregory M, Frey K, Bell M, Truong L, Schully KL, Lawler J, Langley R, Kingsmore SF, Woods CW, Rivers EP, Jaehne AK, Quackenbush EB, Fowler VG, Tsalik EL and Clark DV
Retrospective Analysis of Fever and Sepsis Patients from Cambodia Reveals Serological Evidence of Melioidosis
2018
Authors →
Suttisunhakul V, Hip P, Ouch P, Ly P, Supaprom C, Rachmat A, Prouty M, Vaughn A, Eltayeb A, Kheng S, Clark DV, Lawler JV, Chantratita N, Burtnick MN, Brett PJ and Schully KL
Melioidosis in lower provincial Cambodia: A case series from a prospective study of sepsis in Takeo Province
2017
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Schully KL, Berjohn CM, Prouty AM, Fitkariwala A, Som T, Sieng D, Gregory MJ, Vaughn A, Kheng S, Te V, Duplessis CA, Lawler JV and Clark DV
Long-term sequelae after Ebola virus disease in Bundibugyo, Uganda: a retrospective cohort study
2015
Authors →
Clark DV, Kibuuka H, Millard M, Wakabi S, Lukwago L, Taylor A, Eller MA, Eller LA, Michael NL, Honko AN, Olinger GG Jr, Schoepp RJ, Hepburn MJ, Hensley LE and Robb ML